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Update API so that the worker_t parameter is given on creating the sync bloc.

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(API breakage), more RAII like.
This commit is contained in:
Patrick Pelissier committed 2018-07-28 19:09:07 +02:00
1 parent 7678625071
commit 7b5ae3c15b
4 files changed
+57 -54
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bench/nucleotide/nucleotide.c
+11 -11
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@@ -139,21 +139,21 @@ static void compute_hash(dict_oligonucleotide_t hash_Table, const polynucleotide
}
worker_sync_t block; // Define a synchronization block
worker_start(block);
worker_start(block, worker);
dict_oligonucleotide_t hash_Table3, *p_hash_Table3 = &hash_Table3;
dict_oligonucleotide_t hash_Table2, *p_hash_Table2 = &hash_Table2;
dict_oligonucleotide_t hash_Table1, *p_hash_Table1 = &hash_Table1;
WORKER_SPAWN(worker, block, (p_hash_Table1, size, tab, desiredLength), {
WORKER_SPAWN(block, (p_hash_Table1, size, tab, desiredLength), {
init_hash(*p_hash_Table1, size, tab, desiredLength, 3, 4);
}, (/*no output*/));
WORKER_SPAWN(worker, block, (p_hash_Table2, size, tab, desiredLength), {
WORKER_SPAWN(block, (p_hash_Table2, size, tab, desiredLength), {
init_hash(*p_hash_Table2, size, tab, desiredLength, 2, 4);
}, (/*no output*/));
WORKER_SPAWN(worker, block, (p_hash_Table3, size, tab, desiredLength), {
WORKER_SPAWN(block, (p_hash_Table3, size, tab, desiredLength), {
init_hash(*p_hash_Table3, size, tab, desiredLength, 1, 4);
}, (/*no output*/));
init_hash(hash_Table, size, tab, desiredLength, 0, 4);
worker_sync(worker, block);
worker_sync(block);
// Merge all hashtables
dict_oligonucleotide_splice(hash_Table, hash_Table1);
@@ -237,24 +237,24 @@ int main()
// Do the following functions in parallel.
worker_sync_t block; // Define a synchronization block
worker_start(block);
worker_start(block, worker);
WORKER_SPAWN(worker, block, (ptr, output), {
WORKER_SPAWN(block, (ptr, output), {
compute_count(*ptr, "GGTATTTTAATTTATAGT", output[6]);
}, (/*no output*/));
WORKER_SPAWN(worker, block, (ptr, output), {
WORKER_SPAWN(block, (ptr, output), {
compute_count(*ptr, "GGTATTTTAATT", output[5]);
}, (/*no output*/));
WORKER_SPAWN(worker, block, (ptr, output), {
WORKER_SPAWN(block, (ptr, output), {
compute_count(*ptr, "GGTATT", output[4]);
}, (/*no output*/));
WORKER_SPAWN(worker, block, (ptr, output), {
WORKER_SPAWN(block, (ptr, output), {
compute_count(*ptr, "GGTA", output[3]);
}, (/*no output*/));
compute_count(*ptr, "GGT", output[2]);
compute_freq(*ptr, 2, output[1]);
compute_freq(p, 1, output[0]);
worker_sync(worker, block);
worker_sync(block);
// Output the results to stdout.
for(int i=0; i<MAXMUM_NUMBER_OUTPUT; i++)